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Version 3.3.0
General Notes
- First update after Bioconductor conference
- Removes some material specific to conference workshop
- Updates some graphics
- Adds detailed description of runtime consideration
Version 3.2.0
General Notes
- Changes example on
Loading Genome Data
to use a gene rather than random bases
- Updates images for consistency
- Minor edits to formatting
Version 3.1.0
General Notes
- Adds information on using
DECIPHER
’s database API for working with big biological data
- Switches to using base R plots for the phylogenetics section
- Removes
ape
dependency
Version 3.0.0
General Notes
- Version bump; code, writing, examples are presentation-ready aside from possible minor edits
- All download buttons now working
- Images all working
- Minor formatting fixes
Version 2.2.0
General Notes
- Download links fixed
-
IdTaxa
training set now has a download link
- Images added to each page
Version 2.1.0
General Notes
-
ProtWeaver
analysis now uses the correct dataset
- Conclusions page updated
-
IdTaxa
training set fixed
- Download links moved to be on each page
Future Work
- Some download links still missing
- Conclusions need more detail
- Images missing
Version 2.0.0
General Notes
- All examples except
ProtWeaver
analysis use the same dataset
-
IdTaxa
now uses the correct training set
Future Work
-
ProtWeaver
example will be updated
- Conclusions section will be updated with actual takeaways
- Writeup within each section will be changed to reflect new examples
- Images will be added
Version 1.1.0
General Notes
- Minor updates to wording and formatting
- Corrections to
Gene Calling and Annotation
page
- Tutorial section on Alignment-Free Analysis removed (will be readded later once I figure out where to put it)
Version 1.0.0
General Notes
- All tutorials are now complete with dataset and code!
Future Work
- Datasets will be updated prior to conference for consistency
- Language/explanations will be updated
- May include a photo of downloading dataset for
FindingCOGs
page
Version 0.7.0
General Notes
- Adds download button in Setup page for datafiles
- Minor formatting fixes and adjustments
- Examples with
TreeLine
now use the correct version
Version 0.6.0
General Notes
- Updates
GeneCallingAnnotation
with rough draft of code
- Adds some new datafiles for use in tutorials
Version 0.5.0
General Notes
- Updates
LoadingGenomeData
with code
- Updates
ConstructingPhylogenies
with code
- Updates
CoevolutionNetworks
with code
Known Issues
- Data used in code examples is neither consisent nor final
- Several tutorials still missing code
Version 0.4.0
Bugfixes
- Updated some text to support
pkgdown
automatic reference linking
- Minor updates to
README
Version 0.3.0
General Notes
- Updated tutorials with topics that will be covered in final product
Version 0.2.0
Bugfixes
- Changes to fix display of buttons and pagination
Version 0.1.0
General Notes
- Initialization of package
- Creation of several empty files to mockup final layout